Class GoldbergMaximumDensitySubgraphAlgorithmNodeWeights<V extends Pair<?,​java.lang.Double>,​E>

• Type Parameters:
V - Type of vertices
E - Type of edges
All Implemented Interfaces:
MaximumDensitySubgraphAlgorithm<V,​E>

public class GoldbergMaximumDensitySubgraphAlgorithmNodeWeights<V extends Pair<?,​java.lang.Double>,​E>
extends GoldbergMaximumDensitySubgraphAlgorithmBase<V,​E>
This class computes a maximum density subgraph based on the algorithm described by Andrew Vladislav Goldberg in Finding Maximum Density Subgraphs, 1984, University of Berkley.
The basic concept is to construct a network that can be used to compute the maximum density subgraph using a binary search approach.

This variant of the algorithm assumes the density of a positive real edge and vertex weighted graph G=(V,E) to be defined as $\frac{\sum\limits_{e \in E} w(e) + \sum\limits_{v \in V} w(v)}{\left|{V}\right|}$ and sets the weights of the network from GoldbergMaximumDensitySubgraphAlgorithmBase as proposed in the above paper. For this case the weights of the network must be chosen to be: $c_{ij}=w(ij)\,\forall \{i,j\}\in E$ $c_{it}=m'+2g-d_i-2w(i)\,\forall i \in V$ $c_{si}=m'\,\forall i \in V$ where $m'$ is such that all weights are positive and $d_i$ is the degree of vertex $i$ and $w(v)$ is the weight of vertex $v$.
For details see GoldbergMaximumDensitySubgraphAlgorithmBase. All the math to prove the correctness of these weights is the same.

Because the density is per definition guaranteed to be rational, the distance of 2 possible solutions for the maximum density can't be smaller than $\frac{1}{W(W-1)}$. This means shrinking the binary search interval to this size, the correct solution is found. The runtime can in this case be given by $O(M(n,n+m)\log{W})$, where $M(n,m)$ is the runtime of the internally used MinimumSTCutAlgorithm and $W$ is the sum all edge and vertex weights from $G$.

Author:
Andre Immig

• Fields inherited from class org.jgrapht.alg.densesubgraph.GoldbergMaximumDensitySubgraphAlgorithmBase

graph, guess
• Constructor Summary

Constructors
Constructor Description
GoldbergMaximumDensitySubgraphAlgorithmNodeWeights​(Graph<V,​E> graph, V s, V t, double epsilon)
Convenience constructor that uses PushRelabel as default MinimumSTCutAlgorithm
GoldbergMaximumDensitySubgraphAlgorithmNodeWeights​(Graph<V,​E> graph, V s, V t, double epsilon, java.util.function.Function<Graph<V,​DefaultWeightedEdge>,​MinimumSTCutAlgorithm<V,​DefaultWeightedEdge>> algFactory)
Constructor
• Method Summary

All Methods
Modifier and Type Method Description
protected double computeDensityDenominator​(Graph<V,​E> g)
protected double computeDensityNumerator​(Graph<V,​E> g)
protected double getEdgeWeightFromSourceToVertex​(V v)
Getter for network weights of edges su for u in V
protected double getEdgeWeightFromVertexToSink​(V v)
Getter for network weights of edges ut for u in V
• Methods inherited from class org.jgrapht.alg.densesubgraph.GoldbergMaximumDensitySubgraphAlgorithmBase

calculateDensest, getDensity
• Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
• Constructor Detail

• GoldbergMaximumDensitySubgraphAlgorithmNodeWeights

public GoldbergMaximumDensitySubgraphAlgorithmNodeWeights​(Graph<V,​E> graph,
V s,
V t,
double epsilon,
java.util.function.Function<Graph<V,​DefaultWeightedEdge>,​MinimumSTCutAlgorithm<V,​DefaultWeightedEdge>> algFactory)
Constructor
Parameters:
graph - input for computation
s - additional source vertex
t - additional target vertex
epsilon - to use for internal computation
algFactory - function to construct the subalgorithm
• GoldbergMaximumDensitySubgraphAlgorithmNodeWeights

public GoldbergMaximumDensitySubgraphAlgorithmNodeWeights​(Graph<V,​E> graph,
V s,
V t,
double epsilon)
Convenience constructor that uses PushRelabel as default MinimumSTCutAlgorithm
Parameters:
graph - input for computation
s - additional source vertex
t - additional target vertex
epsilon - to use for internal computation
• Method Detail

• computeDensityNumerator

protected double computeDensityNumerator​(Graph<V,​E> g)
Specified by:
computeDensityNumerator in class GoldbergMaximumDensitySubgraphAlgorithmBase<V extends Pair<?,​java.lang.Double>,​E>
Parameters:
g - the graph to compute the numerator density from
Returns:
numerator part of the density
• computeDensityDenominator

protected double computeDensityDenominator​(Graph<V,​E> g)
Specified by:
computeDensityDenominator in class GoldbergMaximumDensitySubgraphAlgorithmBase<V extends Pair<?,​java.lang.Double>,​E>
Parameters:
g - the graph to compute the denominator density from
Returns:
numerator part of the density
• getEdgeWeightFromSourceToVertex

protected double getEdgeWeightFromSourceToVertex​(V v)
Description copied from class: GoldbergMaximumDensitySubgraphAlgorithmBase
Getter for network weights of edges su for u in V
Specified by:
getEdgeWeightFromSourceToVertex in class GoldbergMaximumDensitySubgraphAlgorithmBase<V extends Pair<?,​java.lang.Double>,​E>
Parameters:
v - of V
Returns:
weight of the edge (s,v)
• getEdgeWeightFromVertexToSink

protected double getEdgeWeightFromVertexToSink​(V v)
Description copied from class: GoldbergMaximumDensitySubgraphAlgorithmBase
Getter for network weights of edges ut for u in V
Specified by:
getEdgeWeightFromVertexToSink in class GoldbergMaximumDensitySubgraphAlgorithmBase<V extends Pair<?,​java.lang.Double>,​E>
Parameters:
v - of V
Returns:
weight of the edge (v,t)